quote Walkthrough

Detailed Explanation: This is the Energy Cell that a majority of people have
alot of trouble with, as it is definitely the hardest puzzle to figure out in
this game. First land at the spot where you got your first ship upgrade. From
there you want to head to the Fuel Gel Pool, which should be on your map. When
you arrive here, switch to your command visor, and pick up the large golem head
which you will be needing soon. Now head back through the Landing Bay, past the
Hall of Golems, and to the Colossus Vista. Now switch to your command visor
again and drop the head onto that statue in the background. The statue will now
come alive and break two things in the room. One, is a cage surrounding a ship
missile, and the second is a pile of rubble guarding a door. Head through this
newly opened door into the Machine works and use the Boost Ball slot in this
room. Doing this will turn the grating surrounding you around, and extending a
bridge. But the bridge only gets extended half way, so you'll need to get to
the other side some how. (Note: There's an Energy Tank in this room, which you
can use your Screw Attack to grab). Leave this room via the Morph Ball hole
behind you and head back to the Landing Bay, board your ship, and head to the
Thorn Jungle Airdock.

From the Airdock, head to the North Jungle Court, which should be on your map
because you have already been there earlier. This is the same room where you
once had to destroy an Anti-Air turret and grapple the three levers (Don't
remind me). In this room, climb up to the alcove level and look for a structure
sticking out of one of them. Scanning it indicates it to being a sort of
generator. Switch to your Command Visor and pick it up with the ship grapple.
Lifting it reveals a hole which you can travel through with MorphBall, which
leads you back to the other side of the Machine Works. Now that you are on the
other side, use your boost ball to finally complete the bridge, allowing travel
between the two areas. Walk over the bridge, and through the small hole on the
other side. Next, travel to the Hidden Court and climb up so you can get a good
view of this room. Using your Command Visor, you should spot a place to drop
the generator. Doing so reveals the Energy Cell, which you can obtain by going
up the Half Pipe, and jumping across to where the Energy Cell is.

Good Job!

Credit goes to Ocelot51 for helping me out with this portion of the guide, by
giving me the instructions on how to obtain this.